SE3720319

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11387
  • Solanum lycopersicum
  • SE3720319
  • Mutator
  • M2
  • SL2.40ch02:34845548-34845871
  • TAAATAAAA
  • AGGGAAAATGCACAAGTACCCCCTCAACCTATGCCCGAAATTCCAGAGACACACTTATACTATACTAAGGTTCTATTACCCCTGAACTTATTTTATAAGTAATTTTCTACCCCTTTTTAGCTTACGTGGCACTAGTTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAATAAA     A     A                          A   C                                        --             A         C                           G    AAAAAAAAATCAA   TC
        AGGGA AATGC CAAGTACCCCCTCAACCTATGCCCGA ATT CAGAGACACACTTATACTATACTAAGGTTCTATTACCCCT  GAACTTATTTTAT AGTAATTTT TACCCCTTTTTAGCTTACGTGGCACTA TTTG             CCA  
        ||||| ||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||             |||   
        TCCCT TTACG GTTCATGGGGGAGTTGGATACGGGCT TAG GTCTCTGTGTGAATATGATATGATTCCAGGATAATGGGGG  CTTGAATAAAATA TTATTAAAA ATGGGGAAAAATCGGATGCACCGTGAT GAAC             GGT  
AAAATAAA     A     G                          A   A                                        GA             A         A                           A    --------ACCCG   TA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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