Plant MITE

SE3750321

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11389
Solanum lycopersicum
SE3750321
PIF/harbinger
To11
SL2.40ch09:18459089-18459304
TAA
AGGGCTTGTTTCGATTGACTT

Secondary structure and sequence

TSD TIR

5'

3'

TA  G        C  T      ---------   GCTTATGACTTATAAGCCGAAAGTCATAAGTTAGGATTTCTAACTTATGACTTTTGACTTATTTTTGTTATTTAGAC
  AG GCTTGTTT GA TGACTT         TTG                                                                             
  || |||||||| || ||||||         |||                                                                             T
  TC TGGGCAAA TT ACTGAA         CGA                                                                             
AA  A        C  T      TAAAATCCA   AAATTCGGTTTTATTGAAAAATTCGTTAAAACTTCACAAACCCATTTCAATTTTTCACGAATATTCGTGAAAAAATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3750321

TAAGGGCTTGTTTCGATTGACTTTTGGCTTATGACTTATAAGCCGAAAGTCATAAGTTAGGATTTCTAACTTATGACTTTTGACTTATTTTTGTTATTTAGACTTTAAAAAAGTGCTTATAAGCACTTTTTAACTTTACCCAAACACTTCAAAATTGCTTAAAAAGTTATTTTGGCTTAAAAGCACCTAAAATAAGTCATTTCAAACGGGTACTAA

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