Plant MITE

SE3720322

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11390
Solanum lycopersicum
SE3720322
Mutator
M2
SL2.40ch08:55612692-55613021
TATAATTTA
TAGGGAAAATGCACAAGTACCCCCTCAACCTATGCCCGAAATCCCAAAGACACACTTATACTATACTAAGGTCCAATTACCCCCCTGAACTTATTTTTATAAGTAATTTTCTACCCCTTTTTAGCCTACGTGGCACTAGTTTG

Secondary structure and sequence

TSD TIR

5'

3'

TATAATT      A     -A                              C  A                           A           -           T  A         C           A               G    AAAAAAAAAGTCAA   TC
       TAGGGA AATGC  CAAGTACCCCCTCAACCTATGCCCGAAATC CA AGACACACTTATACTATACTAAGGTCC ATTACCCCCCT GAACTTATTTT AT AGTAATTTT TACCCCTTTTT GCCTACGTGGCACTA TTTG              CCA  
       |||||| |||||  |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||| ||||||||||| || ||||||||| ||||||||||| ||||||||||||||| ||||              |||   
       ATCCCT TTACG  GTTCATGGGGGAGTTGGATACGGGCTTTAG GT TCTGTGTGAATATGATATGATTCCAGG TAATGGGGGGA CTTGAATAAAA TA TTATTAAAA ATGGGGAAAAG TGGATGCACCGTGAT GAAC              GGT  
ATTTAAT      A     GG                              A  C                           A           A           -  A         A           C               A    ---------ACCCG   TA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720322

TATAATTTAGGGAAAATGCACAAGTACCCCCTCAACCTATGCCCGAAATCCCAAAGACACACTTATACTATACTAAGGTCCAATTACCCCCCTGAACTTATTTTTATAAGTAATTTTCTACCCCTTTTTAGCCTACGTGGCACTAGTTTGAAAAAAAAAGTCAACCATCATTGGGCCCACAAGATAGTGCCACGTAGGTCGAAAAGGGGTAAAAAATTATTAATAAAATAAGTTCAAGGGGGGTAATAGGACCTTAGTATAGTATAAGTGTGTCTCTGAGATTTCGGGCATAGGTTGAGGGGGTACTTGGGGCATTATCCCTATAATTTA

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