SE3710326

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11394
  • Solanum lycopersicum
  • SE3710326
  • Tc1/Mariner
  • St8
  • SL2.40ch12:53279942-53280279
  • TA
  • C

Secondary structure and sequence

TSD    TIR
5'



3' 
TACTTTCTC     -       TATTTTACATTTATACTTAACATTTATATTGAGAAATAATGTATTTTACTCTTTTGTTTTTATTTAGTATTTTTGGAACTCAAGTTCTCAATAAATGAATATGATTATTAATTTATTTTGATTATTAATTTAACCAATGAATATGAATAATT
         CGTTA TTTTTTA                                                                                                                                                        
         ||||| |||||||                                                                                                                                                         
         ATGAG AAACAGG                                                                                                                                                        
              T       TAAAATATATAGTAATGAAAGATATTTAACAACCAAGTACTATGAACAATAAAATATTTTAGTTACGTATTTAATAGTATAATAAAGAAAAAATGGTAATACTTAATAATCAGAAGTTTTATATATAAACTGATTGCATTTTTTCAATTCAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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