SE3720328

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11396
  • Solanum lycopersicum
  • SE3720328
  • Mutator
  • M2
  • SL2.40ch04:6541557-6541880
  • ATTATTCTA
  • GGGAAAATGCACAAGTACCCCCTCAACCTATGCCTGAAATCTCAGAGACACACTTATACTATACTAAGGTCCTATTACCCCCCTGAACTTATTTTGTTAATAATTTTTTACCCCTTTTCGACCTACGTGGCACTA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTATTCTA                                                                                                 TAA                  CGA     G        --------TATT  G    CAA
         GGGAAAATGCACAAGTACCCCCTCAACCTATGCCTGAAATCTCAGAGACACACTTATACTATACTAAGGTCCTATTACCCCCCTGAACTTATTTTGT   TAATTTTTTACCCCTTTT   CCTAC TGGCACTA            GT GGCC   
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||   ||||| ||||||||            || ||||   T
         CCCTTTTACGTGTTCATGGGGGAGTTGGATACGGGCTTTAGGGTCTCTGTGTGAATATGATATGATTCCAGGATAATGGGGGGACTTGAATAAAATA   ATTAAAAAATGGGGAAAA   GGATG ACCGTGAT            CA TTGG   
 TCTTATTA                                                                                                 TTC                  ATC     A        CAAAATTTTTTT  G    TAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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