SE3720330

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11398
  • Solanum lycopersicum
  • SE3720330
  • Mutator
  • M9
  • SL2.40ch04:5365424-5365953
  • AAAAAGAAG
  • GGCATAATACATATATTGGACCCTAAACTTGGCTTCAAATTTTAACTTTGACCTCAAACTTTCATAATGCACAAATAGGCACTTCAACTATCCTATCTTTCAATAAATAAACACGTGATT

Secondary structure and sequence

TSD    TIR
5'



3'
AAAAAGAA                           C                                   A  A                 C                                   CATACCT G    A             --C  A   -  C --CG      -   TAATTTTCGAGGCCTACAACAGTTAAAAAATGTTGAAATGACAATTCTACTCTTAATGAATCTTTTTTATATTAACTAAAATTAA
        GGCATAATACATATATTGGACCCTAAA TTGGCTTCAAATTTTAACTTTGACCTCAAACTTTC TA TGCACAAATAGGCACTT AACTATCCTATCTTTCAATAAATAAACACGTGATT       G CAAA TGCGTGAAATGCA   GC TTC TG G    AGTGAG GGA                                                                                     
        ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||       | |||| |||||||||||||   || ||| || |    |||||| |||                                                                                     T
        CCGTATTATGTATATAACCTGGGATTT AACCGAAGTTTAAAATTGAAACTGGAGTTTGAAAG AT ACGTGTTTATCCGTGAA TTGATAGGATAGAAAGTTATTTATTTGTGCGCTAA       C GTTT ACGCACTTTACGT   CG AGG AC C    TCACTC GTT                                                                                     
AGAAAAAA                           A                                   C  C                 A                                   -AAACCT G    C             TTA  A   T  A ATAA      G   AGTCACCGACGGTTGATTAATTTGTAAAATGGGCAGAAAAAAAATTTTATAGAATGTGCAGTAAAACTTTGATTTTTTTTAATTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End