SE3710332

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11400
  • Solanum lycopersicum
  • SE3710332
  • Tc1/Mariner
  • St1
  • SL2.40ch03:2453359-2453613
  • TA
  • CTCCGTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TACTCC   C   CGCTAC     A     --------GT        TTAAAGTGAAACTATAAGAACTTTGACTAATATTTTAAGATTTATTTCTTCATCATATTGATATGCAAAAAATTGCTAATTTA
      CTC GTC      TGTTT TCATG          TTTCATTT                                                                                   
      ||| |||      ||||| |||||          ||||||||                                                                                   T
      GAG TAG      ATAAA AGTAC          AACTGGTT                                                                                   
ATTAAA   T   ATAAAA     C     AACGTAAAAC        AAAAGTTTCAATTTAATCTAATGTAATTAAACTATAAAAAATTTCTTTTCTAAATCTATAAGTTTTTAATATACTTTTCATGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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