SE3720337

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11405
  • Solanum lycopersicum
  • SE3720337
  • Mutator
  • M29
  • SL2.40ch05:5921899-5922628
  • CATTATCTT
  • CATTATCTTGGAGTTAATACCTCAGATGGTCACTTAACTATTCACTCTTCTCTCAGAAAGTCACTCAACTTTCAATTTTCACTCAAAAGTCACTCAACTATGCACGTCTTTCTCAGAAAGTCACTCAACTTTGAATTTTAATTCAAAAGTCACTCAACTATTTACTGTTCCCTCAAAAAGTCACTCAATCTATTAAATTATTTTTTTAATTAAAATTTATTGATATTAATTATTTATATAACAAATTAAAATTTTTTAAAAATAAA

Secondary structure and sequence

TSD    TIR
5'



3'
  TT  CT                                 T             G                                         C     ACG                     A               C                      G  CC                                   T        T  A                                     T         AATACCAT                  CAC   C           G   A     TC         C           -              TTCAA     AAAG
CA  AT  TGGAGTTAATACCTCAGATGGTCACTTAACTAT CACTCTTCTCTCA AAAGTCACTCAACTTTCAATTTTCACTCAAAAGTCACTCAA TATGC   TCTTTCTCAGAAAGTCACTCA CTTTGAATTTTAATT AAAAGTCACTCAACTATTTACT TT  CTCAAAAAGTCACTCAATCTATTAAATTATTTTTT AATTAAAA TT TTGATATTAATTATTTATATAACAAATTAAAATTTTT AAAAATAAA        TTAAACTATTTAGTGATC   CCA CTAATCCGATC ATT AAAAA  TGATATGAC CATTTTATTTT GTCTTTAATCCTAA     GGTTT    
||  ||  ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||   ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||        ||||||||||||||||||   ||| ||||||||||| ||| |||||  ||||||||| ||||||||||| ||||||||||||||     |||||     
GT  TG  ACCTCAATTATGGAGTCTACCAGTGAGTTGATA GTGAGAAGAGAGT TTTCAGTGAGTTGAAAGTTAAAAGTGAGTTTTCAGTGAGTT ATACG   AGAAAGAGTCTTTTAGTGAGT GAAACTTAAAATTGA TTTTCAGTGAGTTGATAGGTGA AA  GAGTTTTTCAGTGAGTTAGATAATTTAATAAAAAA TTAATTTT AA AACTATAATTAATAAATATATTGTTTGGTTTTAAAAA TTTTTATTT        AATTTGGTAAATCACTAG   GGT GATTGGGCTGG TAA TTTTT  ACTATACTG GTAAAATAAAA CAGAAATTAGGATT     TTAAG    
  TC  TT                                 C             A                                         A     -AA                     C               C                      G  AA                                   -        T  C                                     T         --------                  ATA   A           G   A     -T         A           A              --TAA     GAGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End