Plant MITE

SE3720339

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11407
Solanum lycopersicum
SE3720339
Mutator
M30
SL2.40ch05:56325568-56325862
TTCTTTTTA
AGGGAAAAAGGACAAATATACCTCCGAACTACCATAAATAGTATGCAGATACCCTCCGTCATTCTTTTGAGACATTGGTGTCCCTTCGTT

Secondary structure and sequence

TSD TIR

5'

3'

TTCTTTTT              A     CC         CCA     A             CTC      T      A               -     CATAAATT      TATATGCTCTTCACTCTAATGAAGGGGCAGGGGCA
        AGGGAAAAAGGACA ATATA  TCCGAACTA   TAAAT GTATGCAGATACC   CGTCAT CTTTTG GACATTGGTGTCCCT TCGTT        AGAGCA                                   
        |||||||||||||| |||||  |||||||||   ||||| |||||||||||||   |||||| |||||| ||||||||||||||| |||||        ||||||                                    
        TCCCTTTTTCCTGT TATAT  GGGCTTGAT   ATTTA CATACGTTTATGG   GCAGTA GAAAAC CTGTAACCACGGGGA AGCAG        CCCCGT                                   
ATTTTTCT              C     AA         AAA     C             TAA      T      C               C     CATGAAAA      AGCCACGGGGACGGCAATATGAAACTCTGTTAACC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720339

TTCTTTTTAGGGAAAAAGGACAAATATACCTCCGAACTACCATAAATAGTATGCAGATACCCTCCGTCATTCTTTTGAGACATTGGTGTCCCTTCGTTCATAAATTAGAGCATATATGCTCTTCACTCTAATGAAGGGGCAGGGGCACCAATTGTCTCAAAGTATAACGGCAGGGGCACCGATGCCCCAAAAGTACGACGACAGGGGCACCAATGTCCCAAAAGTATGACGAATGGTATTTGCATACCATTTAAAATAGTTCGGGAATATATCTGTCCTTTTTCCCTTCTTTTTA

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