SE3730341

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11409
  • Solanum lycopersicum
  • SE3730341
  • hAT
  • Hat17
  • SL2.40ch11:46439541-46439678
  • GGCAAAAG
  • GCTAAGTTGTTCAGATTCTCCAAAAACTGTTGCCGCACCCGTGTCGAATCCTTCAAAAATACACTATTTTTGGAGGATATGGCACGCGCCCGTCGACATTTTTGAAGAGTCCGAGCAAC

Secondary structure and sequence

TSD    TIR
5'



3' 
GGCAAAA   --AA       A      C      C     C  CA C       A              C
       GCT    GTTGTTC GATTCT CAAAAA TGTTG CG  C CGTGTCG ATCCTTCAAAAATA 
       |||    ||||||| |||||| |||||| ||||| ||  | ||||||| |||||||||||||| A
       CGG    CAACGAG CTGAGA GTTTTT ACAGC GC  G GCACGGT TAGGAGGTTTTTAT 
  GAAAA   GATA       C      A      -     T  CC C       A              C
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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