SE3720342

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11410
  • Solanum lycopersicum
  • SE3720342
  • Mutator
  • M2
  • SL2.40ch05:62733796-62734118
  • TAGTTAATA
  • GTTAATAGGGAAAATGCACAAGTACCCCCTCAATCTATGCCCGAAATTCCAGAGACTCACTTATACTATACTAAGATTCTATTACCCCTGAACTTATTTTATAAGTAATTTTCTACTCCTTTTCGACCTATGTGGCACTAGCTTG

Secondary structure and sequence

TSD    TIR
5'



3'
TA      -     A                                    C       T        C    C    A  C         -              A                                     G    AAAAAAAAG     CA
  GTTAAT AGGGA AATGCACAAGTACCCCCTCAATCTATGCCCGAAATT CAGAGAC CACTTATA TATA TAAG TT TATTACCCC TGAACTTATTTTAT AGTAATTTTCTACTCCTTTTCGACCTATGTGGCACTA CTTG         TCAAC  
  |||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||| |||| || ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||         |||||   
  TAATTG TCCCT TTACGTGTTCATGGGGGAGTTAGATACGGGCTTTAG GTCTCTG GTGAATAT ATAT ATTC AG ATAATGGGG ACTTGAATGAAATA TTATTAAAAGATGAGGAAAAGCTGGATGCACCGTGAT GAAC         GGTTG  
 A      A     A                                    A       T        C    T    C  C         G              A                                     A    ----ACCCG     CG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End