Plant MITE

SE3720344

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11412
Solanum lycopersicum
SE3720344
Mutator
M2
SL2.40ch04:4156630-4156954
TTTTATTTA
AGGGAAAATGCACAAGTACCTTCTCAACCTATGTTTGATATCTCAGAGACACACTTATACTATACTAAGGTCCTATTACCCTCCTGAACATATTTGATAAGTAATTTTCTACCCTTTTCGGCTTACGTGACACTAGTTTG

Secondary structure and sequence

TSD TIR

5'

3'

TTTTATTT     A            -    CTC             T    C     C                               T       A     G  A               -                     G    AAAAAAAAAG     CA
        AGGGA AATGCACAAGTA CCTT   AACCTATGTTTGA ATCT AGAGA ACACTTATACTATACTAAGGTCCTATTACCC CCTGAAC TATTT AT AGTAATTTTCTACCC TTTTCGGCTTACGTGACACTA TTTG          TCAAT  
        ||||| |||||||||||| ||||   ||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||| ||||||| ||||| || ||||||||||||||| ||||||||||||||||||||| ||||          |||||   
        TCCCT TTACGTGTTCAT GGGA   TTGGATACGGGCT TAGA TCTCT TGTGAATATGATATGATTCCAGGATAATGGG GGACTTG ATAAA TA TTATTAAAAGATGGG AAAAGTCGGATGCACTGTGAT GAAC          GGTTG  
ATTTATTT     A            A    -AA             T    A     A                               -       A     A  A               G                     A    -----ACCCA     TA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720344

TTTTATTTAGGGAAAATGCACAAGTACCTTCTCAACCTATGTTTGATATCTCAGAGACACACTTATACTATACTAAGGTCCTATTACCCTCCTGAACATATTTGATAAGTAATTTTCTACCCTTTTCGGCTTACGTGACACTAGTTTGAAAAAAAAAGTCAATCAATGTTGGACCCACAAGATAGTGTCACGTAGGCTGAAAAGGGGTAGAAAATTATTAATAAAATAAGTTCAGGGGGTAATAGGACCTTAGTATAGTATAAGTGTATCTCTAAGATTTCGGGCATAGGTTAAAGGGATACTTGTGCATTATCCCTTTTATTTA

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