SE3710345

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11413
  • Solanum lycopersicum
  • SE3710345
  • Tc1/Mariner
  • St2
  • SL2.40ch03:46895837-46896118
  • TA
  • TACTCCCTCCGTCCCATTTTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
          G C             CAA    --   CC  -   CGGAGTTTAAGAAATAATGAAGACTTTGAAATGTTTATCAAATTGTCCTTCAAAAAAGTAAATTCACTTTTCTCTCTCCTCATAAATGTATTAGAGTA
TACTCCCTCC T CCATTTTATGAGG   AATT  TGA  AG GCA                                                                                                  
|||||||||| | |||||||||||||   ||||  |||  || |||                                                                                                  C
ATGAGGGGGG A GGTAAAATACACC   TGGT  AGG  AA AAC                                                                                                  
          G A             --G    AA   --  A   CAGTCAGAGTTATTCTTACAGTATAAAGGAATATACCATTCATAAATTTCCATGTTAAGGAGAAAATGAGAACAACCAGGGTGAATTAAAATTTGTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3