Plant MITE

SE3710348

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11416
Solanum lycopersicum
SE3710348
Tc1/Mariner
St4
SL2.40ch11:47422951-47423213
TA
TACTCCTTCCGTTCCATCATATGTGTCACCTTT

Secondary structure and sequence

TSD TIR

5'

3'

     CTT C      TCA      T       CGGATTTCA            GTC  TC        T      -TTC     -     TAAACA    ------       CAATTA      -  CATA   CT
TACTC   C GTTCCA   TATGTG CACCTTT         GGAGTCAAATAA   TA  TTTGACCG AAATTT    ATAGA TCTTT      TTTT      GATTTAT      TTGTGA CT    GTA  
|||||   | ||||||   |||||| |||||||         ||||||||||||   ||  |||||||| ||||||    ||||| |||||      ||||      |||||||      |||||| ||    |||  T
ATGAG   G CAGGGT   ATATAC GTGGAAA         TCTCAGTTTGTT   AT  AAACTGGC TTTAAA    TATCT AGAAG      AAAA      TTAAATA      AACATT GA    CAT  
     AGT A      TAA      T       ATACAACAC            -AA  TC        T      TGCA     T     TTTAAC    TTTACT       --TATA      T  --TG   TT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3710348

TACTCCTTCCGTTCCATCATATGTGTCACCTTTCGGATTTCAGGAGTCAAATAAGTCTATCTTTGACCGTAAATTTTTCATAGATCTTTTAAACATTTTGATTTATCAATTATTGTGACTCATAGTACTTTTTACGTAGTTTACAAATATATAAATTTCATTTAAAACAATTTGAAGATTCTATACGTAAATTTTCGGTCAAACTTAAATTGTTTGACTCTCACAACATAAAAGGTGTCATATAAATTGGGACAGTGAGAGTA

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