SE3710349

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11417
  • Solanum lycopersicum
  • SE3710349
  • Tc1/Mariner
  • St3
  • SL2.40ch10:63923373-63923625
  • TA
  • TACTCCCTCCGTTTCAAAAAGATTGACCT

Secondary structure and sequence

TSD    TIR
5'



3' 
                      T      ---A         GGAACGGAGTTTAAGAAAAGAAAGAAGACTTTTTAATCTTGTGGTTCTAATTTAAAGTTATGTCAAATGTACCAAAATACTCTTTA
TACTCCCTCCGTTTCAAAAAGA TGACCT    GTTTGACTT                                                                                      
|||||||||||||||||||||| ||||||    |||||||||                                                                                       
ATGAGGGAGGCAAAGTTTTTCT ACTGGG    AGGAAAAAT                                                                                      
                      T      ATAA         CAAACAAAGTTTTTCTTACTGGGGAAAGGAAACAACCGCTGTGAAATTGAAATTGAAATGTGCACCGTACAAATTCTGGTATTCTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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