Plant MITE

SE3720350

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11418
Solanum lycopersicum
SE3720350
Mutator
M2
SL2.40ch09:63332403-63332711
ATATTTAGG
TTAGGGAAAATGCACAAGTACCCCCTAGACTATGACCAAAATCTCAAAGACACACCTTACTAAGGTCGTATCACCCCCTGAACTTTTTTTTTTTTGTAATTTGGTGTACCTTTTTGGCTTATGTGGCATTC

Secondary structure and sequence

TSD TIR

5'

3'

ATAT                        C          C       T  A           ------         G   C   CC        TTT              GG     -       G              -AAATAT     A    CCT
    TTAGGGAAAATGCACAAGTACCCC TAGACTATGA CAAAATC CA AGACACACCTT      ACTAAGGTC TAT ACC  CTGAACTT   TTTTTTTGTAATTT  TGTAC CTTTTTG CTTATGTGGCATTC       CTCTG CGCG   
    |||||||||||||||||||||||| |||||||||| ||||||| || |||||||||||      ||||||||| ||| |||  ||||||||   ||||||||||||||  ||||| ||||||| ||||||||||||||       ||||| ||||   C
    AATTCCTTTTACGTGTTCATGGGG ATCTGATACT GTTTTAG GT TCTGTGTGGAA      TGATTCCAG ATA TGG  GACTTGAA   AAAAAAACATTAAA  ATATG GGAAAAC GAATACACCGTGAG       GAGAT GCGT   
TTAT                        -          A       -  C           TTGATT         G   A   -A        --C              --     T       A              ACACACT     -    TAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720350

ATATTTAGGGAAAATGCACAAGTACCCCCTAGACTATGACCAAAATCTCAAAGACACACCTTACTAAGGTCGTATCACCCCCTGAACTTTTTTTTTTTTGTAATTTGGTGTACCTTTTTGGCTTATGTGGCATTCAAATATCTCTGACGCGCCTCAATTGCGTAGAGTCACACAGAGTGCCACATAAGACAAAAGGTGTATAAAATTACAAAAAAACAAGTTCAGAGGTAATAGGACCTTAGTTTAGTTAAGGTGTGTCTCTGGATTTTGATCATAGTCTAGGGGTACTTGTGCATTTTCCTTAATATT

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