SE3720355

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11423
  • Solanum lycopersicum
  • SE3720355
  • Mutator
  • M28
  • SL2.40ch09:58886151-58886940
  • CTTTTTAAA
  • ATGAAGTTTCAGTCAAGTATAATTATGTCAACTAATATTCAATAGTCTTTTAGATTCATATCATGTGTACTATATAATAATTTATGGTTGAGATCCATTTAAATTTTATACTCATCTTAATAATAAAAACACCAAAGCTATCAATTATTTTATTTTTTAAAACTATCAAATAAAACAATTAAGTGTACC

Secondary structure and sequence

TSD    TIR
5'



3'
CTTTTTAA      T  CA              T     C    A      A     T         A            T   A      A           C         T         CT              C     CTA      A           A   C           A      A       CTAT          C       --AA     C            G       C C  C          GC     CTCATACTTG   -   AT  ----  T    - - CACTAATTTTAAAAAATCTTACACTTTTGAAGAATCTGAATAAGTATTTATAATTATTTGAGAACCTCCAAATAAGTTCTTTTAAAAATATATATATTT
        ATGAAG TT  GTCAAGTATAATTA GTCAA TAAT TTCAAT GTCTT TAGATTCAT TCATGTGTACTA ATA TAATTT TGGTTGAGATC ATTTAAATT TATACTCAT  TAATAATAAAAACA CAAAG   TCAATT TTTTATTTTTT AAA TATCAAATAAA CAATTA GTGTACC    CTAATATTTT AAAAAAA    TAAGA TGACGGAAATAT TGGACTT C GA TTTTTTATCT  CAAAC          TAT TGA  TT    CT AAAT A A                                                                                                   
        |||||| ||  |||||||||||||| ||||| |||| |||||| ||||| ||||||||| |||||||||||| ||| |||||| ||||||||||| ||||||||| |||||||||  |||||||||||||| |||||   |||||| ||||||||||| ||| ||||||||||| |||||| |||||||    |||||||||| |||||||    ||||| |||||||||||| ||||||| | || ||||||||||  |||||          ||| |||  ||    || |||| | |                                                                                                   G
        TATTTC AG  CAGTTTATATTAAT CAGTT ATTA AAGTTA CGGAA ATCTAAGTA AGTACACATGAT TAT ATTAAA ACCAACTCTAG TAAATTTAA ATATGAGTA  ATTATTATTTTTGT GTTTC   AGTTAG AAAATAAAAAA TTT ATAGTTTATTT GTTAAT CACATGG    GATTATAAAA TTTTTTT    ATTCT ACTGTCTTTATA ACTTGAA G CT AAAAAATGGA  GCTTT          TGA GAA  GT    AT TAAA T T                                                                                                   
GTTTTTCC      T  AC              C     C    C      C     T         C            C   -      C           A         T         AT              T     AAC      A           C   A           C      A       ATTT          A       ATTA     A            A       T C  A          --     ----------   A   --  CTAC  -    G G GTACGAAAGGGGTTTAATACTTCATTAGAGGTTTTTATATAGTTTGAATTTTTATAGTAACTCAAGATTTATTATTAAGTTGATTTCTTATACTAACAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End