SE3720359

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11427
  • Solanum lycopersicum
  • SE3720359
  • Mutator
  • M2
  • SL2.40ch00:14124-14447
  • TATTAATTA
  • ATTAATTAGGGATAATGCGCAAGTATCCCCTCAACCTATGCCCGAAATCTCAGAGACACACTTATACTATACTAAGGTCCTATTACCCCCTGAACTTATTTTATTAATAATTTTCTACCCCTTTTCAGACTACGTGGCAGTATCTTG

Secondary structure and sequence

TSD    TIR
5'



3'
 T      T     T                  C  C      C      C           C          C                   -   C         TAA              T   C  A          G  T    TGGGCCCAACACT
  ATTAAT AGGGA AATGCGCAAGTATCCCCT AA CTATGC CGAAAT TCAGAGACACA TTATACTATA TAAGGTCCTATTACCCCCT GAA TTATTTTAT   TAATTTTCTACCCC TTT AG CTACGTGGCA TA CTTG             
  |||||| ||||| |||||||||||||||||| || |||||| |||||| ||||||||||| |||||||||| ||||||||||||||||||| ||| |||||||||   |||||||||||||| ||| || |||||||||| || ||||             G
  TAATTA TCCCT TTACGTGTTCATGGGGGA TT GATACG GTTTTA GGTCTCTGTGT AATATGATAT ATTCCAGGATAATGGGGGA CTT AATAAAATA   ATTAAAAGATGGGG AAA TC GATGCACCGT AT GAAC             
AT      -     T                  T  A      A      T           A          A                   A   T         TTC              T   A  G          G  C    TTTTTTTTATTTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End