SE3710360

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11428
  • Solanum lycopersicum
  • SE3710360
  • Tc1/Mariner
  • St3
  • SL2.40ch02:49386998-49387250
  • TA
  • TACTCCCTCCGTTTCAAAAAGAATGACCT

Secondary structure and sequence

TSD    TIR
5'



3' 
                A            CCTTTCCTTTTTAATCTGTTT    --     TGACCTCTTTCTTTTTTTGGTAAAATTTTAATTTTAACTTTCCACGTGACATGTTTAAAGCCACAAAATCAAAG
TACTCCCTCCGTTTCA AAAGAATGACCT                     AAAA  AAGAA                                                                          
|||||||||||||||| ||||||||||||                     ||||  |||||                                                                           
ATGAGGGAGGTAAAGT TTTCTTACTGGA                     TGAA  GTGCC                                                                          
                G            ---------------TCAAAC    CA     TCAAATTCTCATATTTCTTCTGAAAACATAGAACACCAGGATTTAATTTCAATCCAATTTACATGTTTTAACGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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