SE3730367

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11435
  • Solanum lycopersicum
  • SE3730367
  • hAT
  • Hat5
  • SL2.40ch06:40183347-40183840
  • GTTATCAA
  • TAGGGGTGTCAAAAGTGA

Secondary structure and sequence

TSD    TIR
5'



3' 
GTTATCAA             --A    ---------ACCCAAACA     AACCCGCCTAAAATTTTAAGGGTTGGGCTCAAGATAATTTGAATTGGGTTCATTTTCAACCCATTCAAGCTTAACCCATTTGAAGAGAATTTTCAATTGAGCCCAATTCAATCTCCAATTTAAACCAGTTATAAAACTTTTTATTAAGATATGTTCCTATAGTGAAGGTATGAATTATTATCTATTTAACATTTTTTAAGA
        TAGGGGTGTCAAA   GTGA                  TAGGT                                                                                                                                                                                                         
        |||||||||||||   ||||                  |||||                                                                                                                                                                                                         T
        ATCCCCACAGTTT   CGCT                  ATAAT                                                                                                                                                                                                         
AACTATTG             ACC    CAACCCAATTTAACCTTT     TTTACCCAAGTTATCTTTAGCCCAACCCAGAACTGGGTGGGTTCAAATGAAACCCGAGTTTACCCGATTTTTGCCCAACTGGGCGGGTTAAACTGGGCTAATTAGAGTTATTAAATTGTATAACTATAAATTGAAAATACTAGTGTTAAACTTAAGGGCGAGTTCTTAAAAAACAATTTTTTCATTGTTTACATATCTATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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