SE3720372

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11440
  • Solanum lycopersicum
  • SE3720372
  • Mutator
  • M14
  • SL2.40ch10:59969391-59969706
  • TTCTTTTTT
  • GGGAAAATGTAGTGTTCCCTAGACTATGACCAAAATATCATAGACACGCCTTAATTAAACTAAGGTCCTATTACCACCGAACTTATTATTTTTAATTTTATACACCTTTTGTCTTACATGGCAC

Secondary structure and sequence

TSD    TIR
5'



3'
TTCTTTTTT         ---TA   -T     A        C A    A   T       C        AA       C        A  -         -A    -       ATA  CC    -GTC    A     - ACTCC  GA   -     AAT
         GGGAAAATG     GTG  TCCCT GACTATGA C AAAT TCA AGACACG CTTAATTA  CTAAGGT CTATTACC CC GAACTTATT  TTTT TAATTTT   CA  TTTT    TTAC TGGCA C     AT  CTC CACGC   
         |||||||||     |||  ||||| |||||||| | |||| ||| ||||||| ||||||||  ||||||| |||||||| || |||||||||  |||| |||||||   ||  ||||    |||| ||||| |     ||  ||| |||||   T
         CCCTTTTAC     TAT  GGGGA CTGATACT G TTTA AGT TCTGTGT GAATTGAT  GATTCCA GATAATGG GG CTTGAATAA  AAAA ATTAAAA   GT  AAAA    AATG ACTGT G     TA  GGG GTGCG   
TTTTTTCTT         TTGGG   GT     A        A C    G   C       A        AA       A        -  A         GA    C       CAC  AA    ATTA    C     A ATTTA  GA   T     GAG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End