SE3720376

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11444
  • Solanum lycopersicum
  • SE3720376
  • Mutator
  • M28
  • SL2.40ch03:48075762-48076364
  • GAGTCTTCT
  • GAGTCTTCTGGATAAAGATCCGGTCAAGTATAATTAGGTCAACTAATGTTCAATGCCTTATAGATTCATACCATGCGTATTATATGATTATTTATTATTGAGATTCATTTAAATTATAT

Secondary structure and sequence

TSD    TIR
5'



3'
     T   CT                           G     C   T        -         -     AC    C            T      TA                             TTAGTAATAAAAACAACAAAGTTATCAACTATTTTTATTTTTTAAAACTATTGAATAAAACAATTAAGTGTAATCCAAGCTAATATTTTCAAAAAAAAATAAATAAATTAAGATTGAAAAGGAAAATTTAATATACTTGATTGAAAGTATTTGCATTATCAAATTGAGTCTTAT
  GAG CTT  GGATAAAGATCCGGTCAAGTATAATTA GTCAA TAA GTTCAATG CCTTATAGA TTCAT  CATG GTATTATATGAT ATTTAT  TTGAGATTCATTTAAATTATATACTCATC                                                                                                                                                                              
  ||| |||  ||||||||||||||||||||||||||| ||||| ||| |||||||| ||||||||| |||||  |||| |||||||||||| ||||||  |||||||||||||||||||||||||||||                                                                                                                                                                              C
  TTC GAG  CTTATTTTTAGGCTAGTTCATATTAAT CAGTT ATT CAAGTTAC GGAATATCT AAGTA  GTAC CATGATATATTA TAAATA  AACTCTAAGTGAATTTAATATATAAGTAG                                                                                                                                                                              
TC   T   --                           A     C   T        C         T     CA    A            T      CC                             AATTATTATTTAAATTTAATTAATTATATGAGTAGAATTATTATTATGTTTGTTGTTTTAACAGTAAATAAAACTAATAAAATTTTGATAGTTTATTTCGTTATTTCACATGAGTTCGATTATAAAAGTTCTTTTTCTTTAATTCTAACTGCCCATACGCCTAGCTCTCAACGG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End