Plant MITE

SE3720380

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11448
Solanum lycopersicum
SE3720380
Mutator
M9
SL2.40ch02:20583207-20583531
TTAATCTTT
GGCATAATACATATATTGGACCCTAAACTTGGCTTCAAATT

Secondary structure and sequence

TSD TIR

5'

3'

TTAATCTTT             T  T  A  CTA                TTAACTT  A           CATAATA     AC        TA   ATCCATCTTTTA       AAACACATAAA         ACACAATACATGTAGGACACCACGTAGGACA
         GGCATAATACATA AT GG CC   AACTTGGCTTCAAATT       TG CCTTTAACTTT       CACAA  AAGCACTT  ACT            AATAAAT           TCCTACATG                               
         ||||||||||||| || || ||   ||||||||||||||||       || |||||||||||       |||||  ||||||||  |||            |||||||           |||||||||                                
         CCGTATTATGTAT TA CC GG   TTGAACTGAAGTTTAA       AC GGAAGTTGAAA       GTGTT  TTTGTGAA  TGA            TTGTTTA           ACTGTGTGT                               
TTTCTAATT             T  T  A  AAA                TATAAAT  G           CCCACAC     CA        TG   ACATATTTCAAC       -----------         ACAGGATACACAGTAGGATGTACAATCAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720380

TTAATCTTTGGCATAATACATATATTGGACCCTAAACTTGGCTTCAAATTTTAACTTTGACCTTTAACTTTCATAATACACAAACAAGCACTTTAACTATCCATCTTTTAAATAAATAAACACATAAATCCTACATGACACAATACATGTAGGACACCACGTAGGACAAAAACTAACATGTAGGATGACACATAGGACATGTGTGTCAATTTGTTCAACTTTATACAAGTGTAAGTGTTTACTTGTGCACACCCAAAGTTGAAGGGCATAAATATAATTTGAAGTCAAGTTAAAGGACCTATTTATGTATTATGCCTTAATCTTT

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