SE3740381

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11449
  • Solanum lycopersicum
  • SE3740381
  • CACTA
  • Ca1
  • SL2.40ch01:68671632-68672108
  • TAA
  • ATACTATGTTTGGATCATTGTTATCCATTGTATTGTATTGTATTGTTACT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA     A    T                 ----------                  T   ATACC   ---   GTTTGTTTTGATTGTTACTTAAAATGTATTGTACTGTATTGTTAAATTTCGTTGTTACGTAACAATGGAAACCCCTATTTTATGGAACAACCAATTTGGTGTGTTCCCATTGTTACTTACTTTCTTTTTTCAATTATATCTTTACATAATATTTTAAAATACTATTTTACCC
  ATACT TGTT GGATCATTGTTATCCAT          TGTATTGTATTGTATTGT ACT     TAC   AAT                                                                                                                                                                            
  ||||| |||| |||||||||||||||||          |||||||||||||||||| |||     |||   |||                                                                                                                                                                             
  TGTGA ACAA CCTAGTAACAATGGGTA          ACATAACATAACATAACA TGA     GAT   ATG                                                                                                                                                                            
AA     A    C                 ACAAAGTAAT                  -   -----   AAC   ACATAACATACCATCTATGTTACAAACTGATCTAACATAACAAACAACAACAAATCATTGTAAAATTAACAAACCAAACTAACACATGACATAATATTAAATATTTAAATGAATTTATAGGAATTAATAAAATCCCATCCTCCAAACTGATCTAAATTTATTAATTCCATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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