Plant MITE

SE3720382

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11450
Solanum lycopersicum
SE3720382
Mutator
M32
SL2.40ch07:26956192-26956539
TTTTATATG
ATGGGAAAAAGGATAAATATATCCCTGAACTATCATAAATGGTATGTAGATACCATCTGTCATATTTTTGAGATATTG

Secondary structure and sequence

TSD TIR

5'

3'

TTTTAT     A               T  C          TA       T   G     A     C                 TTTC C            T          A           -------------    ------- A   AAAACTAAATAGGGACACAACGCAATCTTA
      ATGGG AAAAGGATAAATATA CC TGAACTATCA  AATGGTA GTA ATACC TCTGT ATATTTTTGAGATATTG    C CTATCGTCCAAA ATTAGAGCGT TATGCCCTTTA             CCCT       A TAG                              
      ||||| ||||||||||||||| || ||||||||||  ||||||| ||| ||||| ||||| |||||||||||||||||    | |||||||||||| |||||||||| |||||||||||             ||||       | |||                              T
      TACCC TTTTCCTGTTTATAT GG ACTTGATAGT  TTACCAT CGT TATGG AGGCA TATGAAAACTCTATAAC    G GATAGTAGGTTT TGATTTCGTA ATATGGGAAAT             TGTG       T TAG                              
ATATTT     C               T  A          TC       T   A     G     C                 CACA A            T          C           ATCATTGTTTGTA    CAAATTA -   AATAGGTGGCTGGGTTGTAATCTAGCTACC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720382

TTTTATATGGGAAAAAGGATAAATATATCCCTGAACTATCATAAATGGTATGTAGATACCATCTGTCATATTTTTGAGATATTGTTTCCCCTATCGTCCAAATATTAGAGCGTATATGCCCTTTACCCTAATAGAAAACTAAATAGGGACACAACGCAATCTTATCCATCGATCTAATGTTGGGTCGGTGGATAAGATTATTAAACGTGTATGTTTGTTACTATAAAGGGTATACATGCTTTAGTTTTTGGATGATAGAGACACCAATATCTCAAAAGTATCACGGAGGGTATATGCTTACCATTCTTGATAGTTCAAGGTTATATTTGTCCTTTTCCCCATTTTATA

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