SE3720385

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11453
  • Solanum lycopersicum
  • SE3720385
  • Mutator
  • M2
  • SL2.40ch04:5556662-5556988
  • ATTATCTTA
  • GGGAAAATGCACAAGTACCCCCTTAACTTATGCCCGAAAATCCAGAGACACACTTATACTATACTAAGGACCTATTACCTCCCTGAACTTATTTTATTAGTAATTTTCTACCACTTTTCGGCCTACGTGGCACTA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTATCTTA    A            C              -C    AA   -                       A   A        C     -                          -  A                      ----------   TGAAATAAAAA
         GGGA AATGCACAAGTA CCCCTTAACTTATG  CCGA  ATC CAGAGACACACTTATACTATACT AGG CCTATTAC TCCCT GAACTTATTTTATTAGTAATTTTCTA CC CTTTTCGGCCTACGTGGCACTA          GCT           
         |||| |||||||||||| ||||||||||||||  ||||  ||| ||||||||||||||||||||||| ||| |||||||| ||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||          |||           G
         CCCT TTACGTGTTCAT GGGGAGTTGGATAT  GGTT  TAG GTTTCTGTGTGAATATGATATGA TCC GGATAATG AGGGA CTTGAATAAAATAATTATTAAAAGAT GG GAAAAGCTGGATGCACCGTGAT          GGT           
ATTCTATTA    A            C              AA    --   A                       A   A        -     A                          A  -                      GAAACACCCG   TACGACCAACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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