SE3720386

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11454
  • Solanum lycopersicum
  • SE3720386
  • Mutator
  • M13
  • SL2.40ch02:21785243-21785802
  • AAAAAACTA
  • GGGAAAAGGCTCAAATATGTGATTGAACTTTCAGAAAAGGCTCATTTATGCCATCAATTTAAAGTTTGGCTTATTTATGCCATTACAGTTAAATTCATGCCATTATTTTTAACGGTGATTTTGCAAAACCATTTTTGACACGTGGC

Secondary structure and sequence

TSD    TIR
5'



3'
AAAAAACTAAA                    G                             C     AT                     C      A     -----------       C      -           A   T       C                CAATTAAAATTCAT        -         -   A     AAATCTTAATTCT            GATTTAATTTTTTTTATTCTTTTAATTAAATAAATTGATGACGTGGCCGAATTATAATTGGCAACG
           GGGAAAAGGCTCAAATATGT ATTGAACTTTCAGAAAAGGCTCATTTATG CATCA  TTAAAGTTTGGCTTATTTATG CATTAC GTTAA           ATTCATG CATTAT TTTTAACGGTG TTT GCAAAAC ATTTTTGACACGTGGC              CCACGTCA TCAATTTTT TAA TAAAA             GAAAAAAAAAGT                                                                  
           |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||| |||||| |||||           ||||||| |||||| ||||||||||| ||| ||||||| ||||||||||||||||              |||||||| ||||||||| ||| |||||             ||||||||||||                                                                  C
           CCTTTTTCCGAGTTTATACA TAACTTGAAAGTCTTTTCCGAGTAAATAC GTAGT  AATTTCAAACTGAGTAAATAC GTAATG CAATT           TAAGTAC GTAATA AAAATTGTTAC AAA CGTTTTG TAAAAACTGTGCACCG              CTTAATAT AACCGTTGC GTA GTTAA             AAAATTATTTTT                                                                  
  AATCAAAAA                    G                             A     -C                     A      G     GCTTTTCCGAG       A      C           C   C       A                --------------        A         A   -     -------------            TTAATTTTTCTTTTTATTAAGTTAAAAATAAGTCTTAAAACTTAAAAAAATAATTTATTTAACTAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End