SE3740387

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11455
  • Solanum lycopersicum
  • SE3740387
  • CACTA
  • Ca5
  • SL2.40ch11:50247519-50247660
  • TAA
  • ACTACAAGAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAC            --------------G   AATTATATATAAAAAAAATTGAGAATTAGTGTGAAAGTTTGCAG
    ACTACAAGAAAA               CTC                                            
    ||||||||||||               |||                                             
    TGATGTTCTTTT               TCT                                            
AATA            AACACTTAAACAACC   AAAAAGACCCCAAATCATGCTTTTAGACATCCTTTAAATAAAGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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