Plant MITE

SE3710388

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11456
Solanum lycopersicum
SE3710388
Tc1/Mariner
St3
SL2.40ch12:34528863-34529114
TA
TACTCCCTCCATTTCAAAAAGAATG

Secondary structure and sequence

TSD TIR

5'

3'

          A   C      A   TCCCTATTTCCTTT        TTTCAAAA      TC  ----    CT    ---T   CAACA   TAACTTTAACTTTCCACGTGACATGTTTAAGACCACAAGATTAAAGGG
TACTCCCTCC TTT AAAAAG ATG              TTAGTTTG        AGAATG  CC    CTTT  TTTT    TGG     CTT                                                
|||||||||| ||| |||||| |||              ||||||||        ||||||  ||    ||||  ||||    |||     |||                                                C
ATGAGGGAGG AAA TTTTTC TAC              GATCAAAC        TGAACT  TG    AATT  TTTT    TTC     TGA                                                
          C   T      C   ------------TC        --------      -T  CCTC    TC    CTTC   -----   AAAATTAGAACACCAAAATTTAATTTCAATACAGTTTACATGGTTTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3710388

TACTCCCTCCATTTCAAAAAGAATGTCCCTATTTCCTTTTTAGTTTGTTTCAAAAAGAATGTCCCCTTTCTTTTTTTGGCAACACTTTAACTTTAACTTTCCACGTGACATGTTTAAGACCACAAGATTAAAGGGCATTTTGGTACATTTGACATAACTTTAATTTAAAACCACAAGATTAAAAAGTCTTCTTCTTTTCTTTAACTCCGTTTCAAGTCAAACTAGCTCATCCTTTTTTAAACGGAGGGAGTA

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