Plant MITE

SE3710392

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11460
Solanum lycopersicum
SE3710392
Tc1/Mariner
St2
SL2.40ch04:6077644-6077922
TA
TACTTTCTCCGTCTCATTTTATGTGG

Secondary structure and sequence

TSD TIR

5'

3'

      CTC                 GAACA     CCA    CGAAATTTAAGAAATAA GAAGACTTTTAAATGTTTATCAAATTGCCCTTCAAAAAATAAACTCACTTTTCTCTCTCCTCATAAATATATTATAGTACTATGTTTA
TACTTT   CGTCTCATTTTATGTGG     TTTGA   GGCA                 T                                                                                        
||||||   |||||||||||||||||     |||||   ||||                 |                                                                                        A
ATGAGG   GCAGGGTAAAATACACT     AGGAA   AAAC                 C                                                                                        
      TAA                 GCGAT     ---    ----------------- AGTTAAGGTTTTTCTTTCAGTGTAAAAGAATATACTATTTATAAATTTCCATATTAAAGAGAAAATGGAAACAACCAGGGTGAATTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3710392

TACTTTCTCCGTCTCATTTTATGTGGGAACATTTGACCAGGCACGAAATTTAAGAAATAATGAAGACTTTTAAATGTTTATCAAATTGCCCTTCAAAAAATAAACTCACTTTTCTCTCTCCTCATAAATATATTATAGTACTATGTTTAAAATTAAGTGGGACCAACAAAGGTAAAAGAGAAATTATACCTTTAAATATTTATCATATAAGAAAATGTGACTTTCTTTTTGGAATTGACCAAAAAGGATAGCGTCACATAAAATGGGACGAATGGAGTA

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