SE3720393

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11461
  • Solanum lycopersicum
  • SE3720393
  • Mutator
  • M14
  • SL2.40ch09:49757695-49758029
  • TTGAAAATT
  • GGGAAAGGATAGAAGTACAACCCTAGACTATGACCCAAATCCCAGAGACACACCTTAACTAAACTAAGACCCTATTACCCC

Secondary structure and sequence

TSD    TIR
5'



3' 
 TTGAAAATT    -AA  A  G      AA               -   A   C         CCT             ACC     A    -ATA -  TCATTTTGTAATTTTGTACACCTTTTTGATTTACGTGACATCCAAATATATTTCATGCGCTTCAACTGCATG
          GGGA   GG TA AAGTAC  CCCTAGACTATGACC CAA TCC AGAGACACA   TAACTAAACTAAG   CTATT CCCC    A AC                                                                        
          ||||   || || ||||||  ||||||||||||||| ||| ||| |||||||||   |||||||||||||   ||||| ||||    | ||                                                                         
          CCCT   CC AT TTCATG  GGGATCTGATACTGG GTT AGG TCTCTGTGT   ATTGATTTGATTC   GATAG GGGG    G GA                                                                        
TTTAAAAGTT    CTG  -  G      -G               C   A   -         ---             ATT     A    GGGG G  GAGAAGGGGATCGCTTGAGTAAAATACATATTATAACATGTGGAAACTGAATATACCGTGTAGAGCACTGAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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