Plant MITE

SE3710395

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11463
Solanum lycopersicum
SE3710395
Tc1/Mariner
St4
SL2.40ch12:40418555-40418816
TA
TACTCCCTCCGTCTCATTTATGTGGTACTTTTTGCATTTCGAGATTCAAACA

Secondary structure and sequence

TSD TIR

5'

3'

         C         -               CA        T       AATCTAT T       T      TTAA    TCCTTTTAACAGTTTGAATTATCAATTATTGTGACTTACAATACTCTTTA
TACTCCCTC GTCTCATTT ATGTGGTACTTTTTG  TTTCGAGA TCAAACA       C TTGATCG ATGTTT    TAGA                                                  
||||||||| ||||||||| |||||||||||||||  |||||||| |||||||       | ||||||| ||||||    ||||                                                   
ATGAGGGAG CAGAGTAAA TATACTGTGAAAAGT  AAAGCTCT AGTTTGT       G AACTGGC TGTAAA    CGGA                                                  
         A         A               AA        C       -GCAATT T       C      ----    TACCTTAAAAGTTAAAAAAAATTTACTTTAAATATATAAACACTTCATGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3710395

TACTCCCTCCGTCTCATTTATGTGGTACTTTTTGCATTTCGAGATTCAAACAAATCTATCTTTGATCGTATGTTTTTAATAGATCCTTTTAACAGTTTGAATTATCAATTATTGTGACTTACAATACTCTTTAAGTACTTCACAAATATATAAATTTCATTTAAAAAAAATTGAAAATTCCATAGGCAAATGTCCGGTCAATGTTAACGTGTTTGACTCTCGAAAAATGAAAAGTGTCATATAAAATGAGACAGAGGGAGTA

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