Plant MITE

SE3720396

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11464
Solanum lycopersicum
SE3720396
Mutator
M9
SL2.40ch10:35339251-35339574
TCTTTTTAG
AGTCATAATACATAAATATGACCCTTAACTTGGTGTCAATTGACAACTATGGCCTTTAACTTTGTGTATGAACAAATAGACACTTAAACTTGTATAAAATTGAGCAAATGAACACA

Secondary structure and sequence

TSD TIR

5'

3'

TCTTTTT  T                   C                 T       ATG      -       T  A  A    A              TG               A        TTCA         AAACATTACATGACAATTTT    CC      ACAT
       AG CATAATACATAAATATGAC CTTAACTTGGTGTCAAT GACAACT   GCCTTT AACTTTG GT TG ACAA TAGACACTTAAACT  TATAAAATTGAGCAA TGAACACA    TCCTACATG                    GTAT  TACATG    
       || ||||||||||||||||||| ||||||||||||||||| |||||||   |||||| ||||||| || || |||| ||||||||||||||  ||||||||||||||| ||||||||    |||||||||                    ||||  ||||||     
       TC GTATTATGTATTTGTACTG GAATTGAATCGCAGTTG TTGTTGA   CGGAAG TTGAAAC TA AC TGTT ATCTGTGAATTTGA  ATATTTTAACTTGTT ATTTGTGT    AGGATGTAT                    CGTA  ATGTGC    
TTTTTCT  C                   A                 C       -CA      G       T  C  G    C              TA               C        TCAC         --------------------    TT      ATCC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720396

TCTTTTTAGTCATAATACATAAATATGACCCTTAACTTGGTGTCAATTGACAACTATGGCCTTTAACTTTGTGTATGAACAAATAGACACTTAAACTTGTATAAAATTGAGCAAATGAACACATTCATCCTACATGAAACATTACATGACAATTTTGTATCCTACATGACATCCTACGTGTATTATGCTATGTAGGACACTTGTGTTTACTTGTTCAATTTTATAATAGTTTAAGTGTCTACTTGTGCACATTCAAAGTTGGAAGGCACAGTTGTTCGTTGACGCTAAGTTAAGAGTCATGTTTATGTATTATGCCTTCTTTTT

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