SE3720397

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11465
  • Solanum lycopersicum
  • SE3720397
  • Mutator
  • M2
  • SL2.40ch10:25436518-25436842
  • CAAAATTAG
  • AGGGATAATGCTCAAGTACCCCCTCAACCTATGCCCGAAATCTCAGAGACACACTTATACTATACTAAGGTCCTATTAACCCCCTGAACTTATTTTATTAATAATTTTTTACCCCTTTTTGACCTACGTGGCACTATCTTGTGGGTCCAAC

Secondary structure and sequence

TSD    TIR
5'



3' 
CAAAATT       A   T      C              C   A       G                                A                   TAA                    A              TC   ------T     C   GA
       AGGGATA TGC CAAGTA CCCCTCAACCTATG CCG AATCTCA AGACACACTTATACTATACTAAGGTCCTATTA CCCCCTGAACTTATTTTAT   TAATTTTTTACCCCTTTTTG CCTACGTGGCACTA  TTG       GGGTC AAC  
       ||||||| ||| |||||| |||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||   |||||||||||||||||||| ||||||||||||||  |||       ||||| |||   
       TCCCTAT ACG GTTCAT GGGGAGTTGGATAC GGC TTAGGGT TCTGTGTGAATATGATATGATTCCAGGATAAT GGGGGACTTGAATAAAATG   GTTAAAAGATGGGGAAAAAT GGATGCACTGTGAT  AAC       TTCAG TTG  
TTAAAAC       C   T      A              A   A       G                                A                   TTC                    C              CA   TTTTTTT     -   GT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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