SE3710401

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11469
  • Solanum lycopersicum
  • SE3710401
  • Tc1/Mariner
  • St3
  • SL2.40ch00:12696536-12696786
  • TA
  • TACTCTCTCCGTTTAAATAAGAATGGTCTAGTTTGACTTGG

Secondary structure and sequence

TSD    TIR
5'



3' 
                 T           A    GAC    ----AC          AAAAGAAAGAAAATTTTTTGATCTTGTGGCTCTAAATTAAATTTATGACGAATAAACCAAAATGCTCTTT
TACTCTCTCCGTTTAAA AAGAATGGTCT GTTT   TTGG      GGAGTTTAAG                                                                      
||||||||||||||||| ||||||||||| ||||   ||||      ||||||||||                                                                      A
ATGAGAGAGGTAAATTT TTCTTACTAGA TAAA   AATC      AGTTTTTCTT                                                                      
                 T           G    AAA    AGATAA          ACTGGGGAAAAATTAAAAACCTTTTTGAAATTGAAATTGAAAGGTGCACTGTATAAATTATGGTGTTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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