Plant MITE

SE3710402

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11470
Solanum lycopersicum
SE3710402
Tc1/Mariner
St2
SL2.40ch11:6619583-6619861
TA
TACTCCGTCCGTCCAATTTTATGTGGCACCATTT

Secondary structure and sequence

TSD TIR

5'

3'

     CG       A             C     CC   TTTGTCAGTCCCAAAAAGAATGTCACATTTCCTTATATGGTAAGTATTTAAAAGTATAATTTCTTTTTTACCCTTGTTGGTCCCACTTAATTTTAAAATA
TACTC  TCCGTCC ATTTTATGTGGCA CATTT  TTT                                                                                                    
|||||  ||||||| ||||||||||||| |||||  |||                                                                                                    G
ATGAG  AGGCAGG TAAAATACACCGT GTAAA  GGC                                                                                                    
     CG       G             T     CT   CCGTGCCTCAAATTCTTTATTTACTTCCGAAACTTTACAGATGGTTTAACAGGAAGTTTCATCTGATTGAAAAGAAAGAGGAGTATTTACATAAACTCAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3710402

TACTCCGTCCGTCCAATTTTATGTGGCACCATTTCCTTTTTTGTCAGTCCCAAAAAGAATGTCACATTTCCTTATATGGTAAGTATTTAAAAGTATAATTTCTTTTTTACCCTTGTTGGTCCCACTTAATTTTAAAATAGTACTCAAATACATTTATGAGGAGAAAGAAAAGTTAGTCTACTTTGAAGGACAATTTGGTAGACATTTCAAAGCCTTCATTTATTTCTTAAACTCCGTGCCCGGTCAAATGTTGCCACATAAAATGGGACGGAGCGAGTA

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