Plant MITE

SE3710408

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11476
Solanum lycopersicum
SE3710408
Tc1/Mariner
St6
SL2.40ch07:6140843-6141105
TA
TACTTCCTCTGTCCGTATTTA

Secondary structure and sequence

TSD TIR

5'

3'

              G      CTTATTCATATTT   C -    -   GTCCTTATTTACTTATTCATTTTTACAAATTAAAAAAGGATAATTTTTTCCTTATTATACCCTCATTTAAACTTCTTGAAAATTTCCAAGT
TACTTCCTCTGTCC TATTTA             TCT T TTTA GTT                                                                                           
|||||||||||||| ||||||             ||| | |||| |||                                                                                           T
ATGAGGGAGACAGG ATAAAT             CAA C GATG AAT                                                                                           
              G      -------------   - A    A   CTTTACTGTGTGTATAATTCTATCGTTGTTAATCGTATCACTTAAATATTAAAATGGGAATAATTAATACCAAAGTTTTTACTACTTAATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3710408

TACTTCCTCTGTCCGTATTTACTTATTCATATTTTCTCTTTTAGTTGTCCTTATTTACTTATTCATTTTTACAAATTAAAAAAGGATAATTTTTTCCTTATTATACCCTCATTTAAACTTCTTGAAAATTTCCAAGTTTTAATTCATCATTTTTGAAACCATAATTAATAAGGGTAAAATTATAAATTCACTATGCTAATTGTTGCTATCTTAATATGTGTGTCATTTCTAAAGTAGACAACTAAATAGGGACAGAGGGAGTA

Copy Cancel