SE3720412

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11480
  • Solanum lycopersicum
  • SE3720412
  • Mutator
  • M14
  • SL2.40ch01:9427555-9427885
  • TTATTTTAT
  • TGGGATAATGCACAAGTACCCTCCTAGATTATAACCGAAATTCCAGAGACACACTTTAACTAAACTAAGGTCCTATTACCCCATCTGAAATTAATTTTTTTGTAATTTTGTACACCTTTTGCTTCACGTGGCACACTTCGTGACTCCACGCG

Secondary structure and sequence

TSD    TIR
5'



3'
TTATTTTATTATTT     -T                 C        A    AA   C  G         T  A    A          AT      ATC        ATT          T    A        --    C        CAC    --TGA   -      ATT
              TGGGA  AATGCACAAGTACCCTC TAGATTAT ACCG  ATT CA AGACACACT TA CTAA CTAAGGTCCT  TACCCC   TGAAATTA   TTTTTGTAAT TTGT CACCTTTT  GCTT ACGTGGCA   TTCG     CTC CACGCG   
              |||||  ||||||||||||||||| |||||||| ||||  ||| || ||||||||| || |||| ||||||||||  ||||||   ||||||||   |||||||||| |||| ||||||||  |||| ||||||||   ||||     ||| ||||||   G
              ATCCT  TTACGTGTTCATGGGGG ATCTGATA TGGC  TAG GT TCTGTGTGG AT GATT GATTCCAGGA  ATGGGG   ACTTTAAT   AAAAACATTA AACA GTGGGAAA  CGAA TGCACTGT   AAGT     GAG GTGTGC   
        TTTATT     TT                 T        C    AA   A  A         T  C    -          GC      -GA        AAT          T    C        AC    -        ---    TTAAA   A      GAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End