SE3730414

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11482
  • Solanum lycopersicum
  • SE3730414
  • hAT
  • Hat22
  • SL2.40ch05:31362161-31362864
  • CATATATA
  • ATATATATAGGGGTGTGCA

Secondary structure and sequence

TSD    TIR
5'



3'
C      A            AAA    - A   --     T -----    GAA     ---  AATATTATTGGGTTATTGTTGTTGGGTAATTGGGTTATTAGATTTTTAATAGGTTTAGAAAAAATAATTATTGGGTTATTGGGTCAGTTTCGGTTTTTCCTATTGGGTTATTGGGTAAACCGATAACCCAATAATACGATAGTTATTTACTACTTTACCCTTCCTCAATATTAAATATACATAATTTAATACATAAAATAGATTCAATATTAGCTTTTCAAGCTATGTGATTTTTTGGTTAGGAAATTGGTGAGAACTTTGTTGATTATCTGGTGGAGCAAGCAACTGTTCAAGATT
 ATATAT TAGGGGTGTGCA   ACCG A CCG  ACCAA A     AATT   CCGAT   AA                                                                                                                                                                                                                                                                                                         
 |||||| ||||||||||||   |||| | |||  ||||| |     ||||   |||||   ||                                                                                                                                                                                                                                                                                                          
 TATATA ATCCCCACACGT   AGCC G CCA  TCAAA C     TGTA   ATTAG   AG                                                                                                                                                                                                                                                                                                         
A      C            ---    A -   AG     - CAAAA    --T     CCA  CCAAATAGCTAAAAGCCAAAATTTTATACGATTGGGTTATTGTTTGGTATTTTTAAAAAAATAGCCAAATAGCCAAAAACTACAACAGCTAAACCAAAGCCGATTGGGTTATTCTTTTACAGCTAGTTTATTATATATTATCATGCATATAATATTAATTTACAATGTTTGAATGGCGGTTTTGTATTATCTTTTGAAAATTACAACTAGTTTAATGATTGTAAGTGTTTGAACATTTTCGATAGCGGATGTTAATGCTTGATCTTAATTTTGATTTTATTTTATAAAGTTACTCTG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End