SE3730415

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11483
  • Solanum lycopersicum
  • SE3730415
  • hAT
  • Hat23
  • SL2.40ch11:5012177-5012311
  • GTTTCAGT
  • TCTTGTTGCTTGGACTCTTCAGAAATGTCGGCGGGTGCGTGTCGGATTCTCCAAAAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
GTTTCAG   -        GG               CG  - G  G G                   AC
       TCT TGTTGCTT  ACTCTTCAGAAATGT  GC G GT C TGTCGGATTCTCCAAAAGT  
       ||| ||||||||  |||||||||||||||  || | || | |||||||||||||||||||  T
       GGA ACAACGAG  TGAGAGGTTTTTACA  CG C TG G ACAGCCTAAGAGGTTTTCA  
 GACTTT   T        TA               -A  A G  G G                   CG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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