SE3740417

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11485
  • Solanum lycopersicum
  • SE3740417
  • CACTA
  • Ca3
  • SL2.40ch02:31347537-31347681
  • ATA
  • CACTACAAAACGAAAC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATA     C  AAC     GAAC                 C  AT      T        --   --     AAA
   CACTA AA   GAAAC    AATTACATGGGGATTTT CT  GGATTA TATGGAAA  TCC  GTAGA   
   ||||| ||   |||||    ||||||||||||||||| ||  |||||| ||||||||  |||  |||||   C
   GTGAT TT   TTTTG    TTAATGTACCTCTAAAA GA  CTTAAT ATACTTTT  AGG  CATTT   
ATA     C  --C     ACAT                 A  CC      C        AA   TC     ATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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