Plant MITE

SE3740420

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11488
Solanum lycopersicum
SE3740420
CACTA
Ca2
SL2.40ch04:51253653-51253866
TAT
CACTACAACCAAAATAACT

Secondary structure and sequence

TSD TIR

5'

3'

TAT         C     A   -         - TTAAAT   GACACTAATAAAGAGTGCTAACGTCTTTACCGGCATTAATTAAGTACCATTAGAACCAATGTCGCTAA
   CACTACAAC AAAAT ACT TTTTGCGGC A      ATT                                                                    
   ||||||||| ||||| ||| ||||||||| |      |||                                                                     
   GTGATGTTG TTTTA TGG AATCGCTGT A      ATT                                                                    
AAT         T     C   T         A ------   AAGAATTAACAGCGATTTATACATAAAAATCGCCGTTAACAGTGAGAAACATATACAGGGATTTCGGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3740420

TATCACTACAACCAAAATAACTTTTTGCGGCATTAAATATTGACACTAATAAAGAGTGCTAACGTCTTTACCGGCATTAATTAAGTACCATTAGAACCAATGTCGCTAAAGGCTTTAGGGACATATACAAAGAGTGACAATTGCCGCTAAAAATACATATTTAGCGACAATTAAGAATTAAATGTCGCTAATGGTCATTTTTGTTGTAGTGTAA

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