SE3720422

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11490
  • Solanum lycopersicum
  • SE3720422
  • Mutator
  • M11
  • SL2.40ch03:58613806-58614236
  • AAAAAAGGG
  • GAGGTTTTAACCAAACTAAGCCATTATATAAAGTCATTTACCAAAATAATATGTTTTTCTAAAATTTTACAAAACTAGTATAAACGTATTCCACAGTAACGTTTTAGCATATATTTTATTTTTTAAAAGTTGATGGCGTCAGATTGATATATGTTACT

Secondary structure and sequence

TSD    TIR
5'



3' 
 AAAAAAGGG   G                C            T  -         A                                            C  CA            CA                              C  A               ---CA  T        TACTCCTAAAACGTTACTCACAGTAACGTTTTAG
          GAG TTTTAACCAAACTAAG CATTATATAAAG CA TTTACCAAA TAATATGTTTTTCTAAAATTTTACAAAACTAGTATAAACGTATT CA  GTAACGTTTTAG  TATATTTTATTTTTTAAAAGTTGATGGCGT AG TTGATATATGTTACT     CA TAACGTTT                                  
          ||| |||||||||||||||| |||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||  |||||||||||||||||||||||||||||| || |||||||||||||||     || ||||||||                                   
          CTT AAAATTGGTTTGATTC GTAATATATTTT GT AAATGGTTT ATTATGTAAAAAGATTTTAAAATGTTTTGATCATATTTGCATAA GT  CATTGCAAAATC  ATATAAAATAAAAAATTTTTGATTGTCGTA TC AACTATATGCAGTGA     AT TGCAAAAT                                  
AGGGAAAAAA   A                A            -  T         C                                            A  AC            CC                              A  C               CATTC  -        GAAAATTTTGCAATAAAAGTCATTGCAAAATGAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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