SE3710423

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11491
  • Solanum lycopersicum
  • SE3710423
  • Tc1/Mariner
  • St4
  • SL2.40ch06:36687418-36687682
  • TA
  • CTCCTTCTGTTCCATTTTATGTGACACTTTTCGCATTTCGAGATTTAAACA

Secondary structure and sequence

TSD    TIR
5'



3'
    TA   CT                            CA    G   T       AGTG  TC        T   T   T    -  TCC      -CA       TTATCAA    CGCGACTTAT      CT
      CTC  TCTGTTCCATTTTATGTGACACTTTTCG  TTTC AGA TTAAACA    TA  TTTGATTG AAC TTT CATA GA   TTTTAA   TTTTGAA       TTAT          ACTACT  
      |||  ||||||||||||||||||||||||||||  |||| ||| |||||||    ||  |||||||| ||| ||| |||| ||   ||||||   |||||||       ||||          ||||||  T
      GAG  AGACAAGGTAAAATACACTGTGAAAAGC  AAAG TCT AGTTTGT    AT  AAACTGGC TTG AGA GTAT CT   AAAGTT   AAAACTT       AATA          TGATGG  
ATGCTA   --                            AA    A   C       -AAA  TA        -   T   C    A  TTA      AAA       TACTTAA    TATAAACATT      AT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End