SE3730431

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11499
  • Solanum lycopersicum
  • SE3730431
  • hAT
  • Hat5
  • SL2.40ch09:47292035-47292544
  • ATTTATAC
  • TAGGGGTGTCAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTTATAC             AATGA   CAAACATAGGTAACCCGTCCAACTCGCCCACAATTTTAAGGGTTGGGCTTAAGATAGTTTGAATTGGTTCAATCTCAACTCATTCAAGCTAAACCCATTTGAAGAGAATTCTCAATTGAGCTCAATTCAATCTCCAATTTCAACCCGTTTTAAAACTTTTATTAAGATATGTTCCTATATCGAACGTATGAATTATTATCTATTTAACATCTTTTAAAATTTATCTAT
        TAGGGGTGTCAAA     ACC                                                                                                                                                                                                                                    
        |||||||||||||     |||                                                                                                                                                                                                                                    A
        ATCCCCACAGTTT     ACT                                                                                                                                                                                                                                    
CATATTTA             -----   CGTCCAACCCAACTTTAACTTTTATAATGTTACCCAACTTATCTTTAACCCAACCCACAACTGAGTGGGTTCAAATTAAACCCGAGTTTACCCGATTTTTTACCCAACTCTGAACTGTACGGGTAAAACTGGGCTAATTAGAGATATTAAATTATATAACTATAAATTGAAAATATTAGTGTTAAACTTAAAGGCGAGTTCTTAAAAAACAAATTTTTCATTGTTTAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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