SE3740433

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11501
  • Solanum lycopersicum
  • SE3740433
  • CACTA
  • Ca2
  • SL2.40ch01:610876-611089
  • TGA
  • ACACTACAACAAAAATGATCATTAGCGGCACTTAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TG      C            CA         C    TTCTTAAT    -    -  TATGTATTTTTAGCGGCAATTGTCACTCTTTGTATATTTTCCTAAAGCCTTTAG
  ACACTA AACAAAAATGAT  TTAGCGGCA TTAA        TGCC GCTA AA                                                      
  |||||| ||||||||||||  ||||||||| ||||        |||| |||| ||                                                      C
  TGTGAT TTGTTTTTATTG  AATCGCCGT AATT        TAAC GTGA TA                                                      
AG      A            AA         -    ------TA    T    T  TTTCTCATGATTTCAGAAATAGCCATAATCAATTCACAGTAATCTTGGTTACAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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