Plant MITE

SE3710437

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11505
Solanum lycopersicum
SE3710437
Tc1/Mariner
St11
SL2.40ch04:48220601-48220842
TA
TACTCCCTCCGTCC

Secondary structure and sequence

TSD TIR

5'

3'

     C   C    AATTTT       GTAGTTTGACTCGA    G -   TAAGAAAGAAAGGAAGACTTCTAAAACTTGTGATTCAAAATGAATGATAGAAATTTGTGTGACTGTAAATCATTTCATTA
TACTC CTC GTCC      ATGTGAG              CACA A GTT                                                                                
||||| ||| ||||      |||||||              |||| | |||                                                                                 
ATGAG GAG CAGG      TATATTC              ACTG A TGA                                                                                
     A   C    ----GT       --------------    - A   AAAGATAAAATCATCAGTGTTTTTCTTACTGTGTAAATATATTATTAATTATTAAATTCATATTTTACAAATAAATGGGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3710437

TACTCCCTCCGTCCAATTTTATGTGAGGTAGTTTGACTCGACACAGAGTTTAAGAAAGAAAGGAAGACTTCTAAAACTTGTGATTCAAAATGAATGATAGAAATTTGTGTGACTGTAAATCATTTCATTAAGGGTAAATAAACATTTTATACTTAAATTATTAATTATTATATAAATGTGTCATTCTTTTTGTGACTACTAAAATAGAAAAGTAAGTCACTTATATTGGGACCGAGAGAGTA

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