SE3710439

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11507
  • Solanum lycopersicum
  • SE3710439
  • Tc1/Mariner
  • St6
  • SL2.40ch01:68543294-68543604
  • TA
  • TACTCCCTCTGTCTTTATTTAGTTGTCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
                     G       ----------------C  CAGAAGTAACATACATATTAAAGCACCAATTATTATCATAGGTCAGTTACAATTTCACTCTTAACTTAAAAGAGTATGCAATTTTCCAAGTATAATAAATGTAATTTCTGGTTCC
TACTCCCTCTGTCTTTATTTA TTGTCCA                 TC                                                                                                                   
||||||||||||||||||||| |||||||                 ||                                                                                                                   A
ATGAGGGAGACAGGGATAAAT AATAGGT                 CA                                                                                                                   
                     G       ATAAAGAAAAATATATA  GAGATAAATGAACAGGTAAAATTGTTTAGTTCTTTCCCGTTGTTAAAAAAAGGATTATACGGGAATAAATTAACATCTTTTAAAGATCATGGTTATTCAACATTACGTACGAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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