Plant MITE

SE3720443

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11511
Solanum lycopersicum
SE3720443
Mutator
M9
SL2.40ch10:35339250-35339575
TAAAAAGAA
GGCATAATACATAAACATGACTCTTAACTTAGCGTCAACGAACAACTGTGCCTTCCAACTTTGAATGTGCACAAGTAGACACTTAAACTATTATAAAATTGAACAAGTAAACACA

Secondary structure and sequence

TSD TIR

5'

3'

TAAAAAGAA  -             C              A C     CGA         -    CC       AA    C                   AT           A     A      --A   - -    CATAGCATAATACACGTAGGATGTCATG
         GG CATAATACATAAA ATGACTCTTAACTT G GTCAA   ACAACTGTG CCTT  AACTTTG  TGTG ACAAGTAGACACTTAAACT  TATAAAATTGA CAAGT AACACA   GTG T CCTA                            
         || ||||||||||||| |||||||||||||| | |||||   ||||||||| ||||  |||||||  |||| |||||||||||||||||||  ||||||||||| ||||| ||||||   ||| | ||||                             
         TC GTATTATGTATTT TACTGGGAATTGAA C CAGTT   TGTTGATAC GGAA  TTGAAAC  ATAC TGTTTATCTGTGAATTTGA  ATATTTTAACT GTTTA TTGTGT   TAG A GTAC                            
 AAGAAAAA  A             A              C A     AAC         C    -A       AC    T                   AC           C     C      AAG   G T    TTTGTAATGTACTGTTAAAACATAGGAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720443

TAAAAAGAAGGCATAATACATAAACATGACTCTTAACTTAGCGTCAACGAACAACTGTGCCTTCCAACTTTGAATGTGCACAAGTAGACACTTAAACTATTATAAAATTGAACAAGTAAACACAAGTGTCCTACATAGCATAATACACGTAGGATGTCATGTAGGATACAAAATTGTCATGTAATGTTTCATGTAGGATGAATGTGTTCATTTGCTCAATTTTATACAAGTTTAAGTGTCTATTTGTTCATACACAAAGTTAAAGGCCATAGTTGTCAATTGACACCAAGTTAAGGGTCATATTTATGTATTATGACTAAAAAGAA

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