Plant MITE

SE3710445

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11513
Solanum lycopersicum
SE3710445
Tc1/Mariner
St3
SL2.40ch07:18890-19144
TA
TACTCCCTCCGTTTCAAAAAGGATGACCTAGTTT

Secondary structure and sequence

TSD TIR

5'

3'

         C                   A    -     GGAACGGAGTTTAAGAAAAGAAAGAAGACTTTTTAATCTTGTGGTACTAAATTAAAGTTATGTCAAATGTACCAAAATGCCCTTTAAT
TACTCCCTC GTTTCAAAAAGGATGACCT GTTT GACTT                                                                                        
||||||||| ||||||||||||||||||| |||| |||||                                                                                         
ATGAGGGAG CAAAGTTTTTTTTACTGGG TAAA GAAAA                                                                                        
         A                   A    G     ATCAGACAAAGTTTTTCTTACTGGGGAAAGGAAAAAAACCGTTGTGAAAATTGAAGTTTAAAGGTGCACTGTACAAATTGTGGTGTTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3710445

TACTCCCTCCGTTTCAAAAAGGATGACCTAGTTTGACTTGGAACGGAGTTTAAGAAAAGAAAGAAGACTTTTTAATCTTGTGGTACTAAATTAAAGTTATGTCAAATGTACCAAAATGCCCTTTAATCTTGTGGTGTTAAACATGTCACGTGGAAATTTGAAGTTAAAAGTGTTGCCAAAAAAAGGAAAGGGGTCATTCTTTTTGAAACAGACTAAAAAGGAAATAGGGTCATTTTTTTTGAAACAGAGGGAGTA

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